VIRTIGATION: Emerging viral diseases in tomatoes and cucurbits: implementation of mitigation strategies for durable disease management, 2021-2025.
Tomato and cucurbits are among the most produced vegetable crops in the world (182 and 84 million metric tons in 2017). These crops are affected by emerging viruses, such as begomoviruses and tobamoviruses, which reduce crop value both quantitatively and qualitatively while increase production costs due to the use of pesticides to control them. Virtigation will enable a deeper understanding of the effect of climate change on plant-virus-vector interactions, develop reliable diagnostic, and control methods including vaccines for plants and biopesticides against virus vectors, as well as integrated pest management strategies. The project will also establish a pipeline for rapid mitigation of emerging crop diseases by developing advanced diagnostic tools enabling early detection of virus variants associated with hyper-virulence and/or expansion to new host species. We will use web-based bioinformatics tools to take advantage of virus and vector sequencing data to identify ecological and environmental factors conducive to increased virulence of existing and emerging viral diseases. New diagnostics methods combined with web-based meta-analysis will help prevent the entry and spread of begomovirus and tobamovirus-associated diseases in Europe and in other regions through introduction of improved quarantine measures. Novel methods to control viral diseases, including biological treatments to limit transmission by seeds and vectors as well as cross-protection strategies, will be developed to rapidly reduce losses associated with viral diseases in tomato and cucurbit production. Natural resistances against viruses and vectors will be investigated and introgressed into preferred varieties to provide a durable mitigation strategy. We will embed research and implementation activities in a multi-actor co-creation and co-design approach with stakeholders for ensuring research activities and products meet the core needs and expectations of the value chain. From our strategies, we anticipate reducing up to 80% losses caused by begomoviruses and tobamoviruses in Europe, Israel and India, where the project will be implemented. This project is funded by the European Commission, led by the KU Leuven University in which Professor Gowda is leading the work package 4.
Dual-resistant cassava for climate resilience, economic development and increased food security of smallholders in eastern and southern Africa (DualCassava), 2018-2021.
This African Union-funded multi-partner project is similar to LimitCBSD project except the focus now is to mitigate the impact of CMD, CBSD and drought in subsistence farmers in Tanzania and Malawi. The researchers will first carry out socio-economic research to understand the impact of the two diseases and drought on the poor. They will then distribute drought-resistant virus-clean cassava varieties to farmers in drought-prone areas as a way of crop diversification to mitigate the impact of drought. They will also screen new cassava lines for viruses to identify most resistant varieties and use state-of-the-art next generation sequencing for identifying genes that are contributing to resistance. This information will be used for developing molecular markers for integration into breeding programmes. The successful implementation of this project will significantly improve the capacity of local partners in controlling both CMD and CBSD and minimize the impact of drought on farmers in drought-prone areas. Total value of the project USD1.2 million.
African cassava whitefly project: outbreak causes and sustainable solutions project, 2014-2018.
Professor Gowda is a Co-PI in this mega project http://cassavawhitefly.org/ led by NRI. He is contributing to three key areas of research and development; to identify natural sources of resistance to African cassava whitefly species in local and exotic cassava lines, and to investigate the role of endosymbionts on whitefly biology, virus transmission and population ecology to understand the phenomenon of whitefly super abundance in African countries.
Building Local Capacity for Surveillance Diagnosis, Characterisation and Control of Cassava Viruses in Northern Nigeria, 2014-2017
Professor Gowda is a Co-PI in this PEARL project led by the Kebbi State University of Science and Technology in Nigeria. Main aim of the project is to build human and physical capacity through training and setting up a virus diagnostic laboratory that is capable of carrying out surveillance, diagnosis and characterization of viruses affecting cassava in northern Nigeria. University researchers, postgraduate students, extension workers and quarantine officers will be trained to identify cassava diseases in the field and also using diagnostic molecular techniques in the lab. Field surveys will be conducted in the nine states of the northern Nigeria to determine the prevalence of CMD including the recently introduced severe strain East African cassava mosaic virus-Uganda (EACMV-Ug) in the region. The EACMV-Ug resistance levels of Nigerian cassava varieties and local land races grown by farmers will be evaluated in field trials. As pre-emptive preparedness, the Nigerian cassava germplasm will be tested for resistance to another important viral disease, the cassava brown streak disease (CBSD) in East Africa through collaborations. CBSD is currently restricted to Eastern Africa but poses greatest threat to cassava production in West Africa through potential inadvertent introductions. Local quarantine officials will be trained and awareness will be created on the potential dangers of introducing CBSD to Nigeria. Added value of this proposal is to build capacity for cassava disease surveillance in northern Nigeria, an area that has long been neglected but equally important for food security and economic development of the farmers. The long term benefits of this investment can be to use the laboratory set up as a strategic point for disease surveillance in West Africa for cassava as well as other important food crops such as yams and legumes. NRI contract value £166K.
Improving the Livelihoods of Smallholder Cassava Farmers Through Better Access to Growth Markets (CassavaGMarkets), 2012-2016.
This multi partner project, led by NRI, funded by the European Commission is aiming to improving the livelihoods of smallholder cassava farmers through better access to growth markets (CassavaGmarkets). Dr Gowda is leading one of the seven work packages of this project, to better understand the epidemiology of CBSD in the disease endemic areas of southern Tanzania. Research will be carried out to identify disease resistant varieties for this region and the next generation sequencing will be used for identifying CBSD resistant genes. Total value of the project Euros 3.5 million.
New cassava varieties and clean seed to combat CMD and CBSD project (5CP), 2012–2016.
Professor Gowda is a partner in this multi-partner project, led by IITA and funded by the Gates Foundation. The project, implemented in five eastern African countries, aims to identify CBSD resistance in 25 elite cassava lines in five target countries and develop a commercial seed system for cassava. Professor Gowda's role is to develop a virus indexing programme for cleaning 25 lines from virus infection using a combination of tissue culture, thermotherapy and chemotherapy, and virus diagnosis. As part of this project, the researchers have successfully developed a virus indexing programme for the African cassava viruses and so far cured over 40 cassava lines from virus infections. Methodologies developed at NRI have wider applications beyond the scope of 5CP as they will contribute in preventing virus-susceptible cassava varieties from extinction and the spread of virus-infected plants to new regions. The NRI component of this project is successfully delivered now. NRI contract value in the project USD 222K.
Limiting the impact of cassava brown streak disease on smallholders, women and the cassava value chain (LimitCBSD). 2012–2015.
Professor Gowda is leading this African Union-funded multi-partner project to mitigate the impact of CBSD in Kenya, Tanzania and Malawi. The main aim of the project is to better understand the recent disease outbreaks in east Africa and devise effective control strategies. The researchers will first carry out socio-economic research to understand the impact of the disease on the poor, in particular on woman farmers who are the main workforce for cassava cultivation. They will then screen new cassava lines for viruses to identify resistant varieties and use state-of-the-art next generation sequencing for identifying genes that are contributing to resistance. This information will be used for developing disease resistance molecular markers for integration into breeding programmes. The successful implementation of this project will significantly improve the capacity of local partners in controlling the disease. Total value of the project Euros 620K.
Whitefly control using Wolbachia, 2012–2013.
This highly innovative Gates Foundation-funded project to control the agricultural pest whiteflies using endosymbiotic bacteria called Wolbachia was led by Professor Gowda. This was a pilot project which ran for 18 months, but Phase II was not funded. Research, however, continued on this interesting topic through a University of Greenwich PhD studentship. Wolbachia infects over 75% of the earth's insect population, and are shown to negatively affect the lifecycles of certain insect species and can also reduce pathogen transmission by them. Certain strains of Wolbachia are therefore used as potential bio-control agents for controlling diseases of medical importance (eg. dengue viruses) transmitted by mosquitoes. Since whiteflies are naturally infected with Wolbachia, the researchers are investigating whether a similar strategy can be employed to reduce the high whitefly populations on cassava in Africa. If successful, this strategy has huge potential for controlling whiteflies and the viruses they transmit since it comes at no-cost to the farmers, is self-perpetuating and can be implemented together with existing control strategies. For this reason, it can be part of an IPM package for the sustainable control of both whiteflies and virus diseases. The most exciting aspect of this research, apart from controlling cassava virus diseases, is the generation of fundamental knowledge that can contribute to better understanding of vector-transmitted pathogens of medical importance. Total value of the project USD 100K.